Packer JS, Zhu Q, Huynh C, Sivaramakrishnan P, Preston E, Dueck H, Stefanik D, Tan K, Trapnell C, Kim J, Waterston RH, Murray JI. A lineage-resolved molecular atlas of C. elegans embryogenesis at single-cell resolution. Science. 2019 Sep 20;365(6459):eaax1971. doi: 10.1126/science.aax1971. Epub 2019 Sep 5. PMID: 31488706; PMCID: PMC7428862.

Provided by Dr. Bob Waterston (04/12/2022)

Graphs file
1. embryo_terminal_cell_types_graphs.tar.bz2
2. lineage_graphs.tar.bz2

Data file for Graphs
1. cell.type.tpms.txt
2. lineage.tpms.txt
Column labels
WBGeneid | gene_name | cell.type | TPM | Proportion of cells expressing

A file for cell type enriched genes
3. cell.markers_top_300.xlsx

A note from Bob
"an excel file with a sheet for the terminal cell types and another for the lineage cell types.  The heuristic score is a measure of specificity biased by expression (the higher the score the better).  it is the log2.ratio of the tpm in the cell type vs the tpm in the other cells * the log2 of the cell.type tpm.  I've included the top 300, which has almost anything that might be useful ( I usually use just the top 10 or 15).